Annotate number of occurrences of a given clonotype in a sample

Source: R/annotate_clonotype_count.R

Annotate number of occurrences of a given clonotype in a sample

annotate_clonotype_count(sce, clonotype_name = "clonotype", group_by = c())

Arguments

sce

SingleCellExperiment object
clonotype_name

name of column in colData containing clonotype - can be generated using `assign_clonotypes`.
group_by

columns to group repertoires by - only counts clonotypes within groups

Value

SingleCellExperiment object with added columns to colData including "clonotype", "clonotype_count", and "clonotype_count_2:10"

Examples

NULL
#> NULL