R/compute_evenness_profile.R
compute_evenness_profile_matrix.Rd
Compute matrix of evenness profiles per group based on clonotype frequency distributions
compute_evenness_profile_matrix( sce_list, group_by = c(), min_alpha = 0, max_alpha = 10, alpha_steps = 51 )
sce_list | list of SingleCellExperiment objects |
---|---|
group_by | column names from colData to use to construct groups for clonotype counting |
min_alpha | minimum Renyi entropy alpha |
max_alpha | maximum Renyi entropy alpha |
alpha_steps | number of steps in between min_alpha and max_alpha |
NULL#> NULL