QC plot of UMI rank vs total number of UMIs per barcode

Source: R/plot_barcode_qc.R

QC plot of UMI rank vs total number of UMIs per barcode

plot_barcode_qc(
  sce_list,
  ambient_rna_filters,
  color = "empty_drops",
  shape = NULL,
  facet_rows = NULL,
  facet_columns = NULL,
  facet_type = "grid",
  point_size = 1,
  text_size = 2,
  alpha = 0.5,
  ...
)

Arguments

sce_list

list of SingleCellExperiment objects
ambient_rna_filters

list of results from filter_ambient_rna function, one for each SCE object in sce_list - must be the same names and order
color

column from colData that is in all objects in sce_list
shape

column from colData that is in all objects in sce_list
facet_rows

columns to facet on
facet_columns

columns to facet on
facet_type

either "wrap" or "grid", same as ggplot
text_size

font size for annotations
...

other params passed into either facet_wrap or facet_grid, depending on facet_type parameter

Value

ggplot with plot of UMI rank vs total number of UMIs per barcode

Examples

NULL
#> NULL