Plot heatmap of features across cells with annotations

Source: R/plot_feature_heatmap.R

Plot heatmap of features across cells with annotations

plot_feature_heatmap(
  sce_list,
  features,
  cell_annotations,
  feature_annotations,
  split_cells,
  split_features,
  assay = "logcounts",
  alt_exp = NULL,
  subsample_cells = FALSE,
  show_cell_dend = FALSE,
  show_feature_dend = TRUE,
  ...
)

Arguments

sce_list

list of SingleCellExperiment objects
features

features to use
cell_annotations

columns in colData to annotate on heatmap
feature_annotations

data frame of annotations related to each feature in `features`
split_cells

columns in colData to split columns (cells) by
split_features

data frame of groups to split rows (features) by
assay

assay in SingleCellExperiment to pull data from
alt_exp

altExp in SingleCellExperiment to pull data from
subsample_cells

whether to subsample cells to smallest group (if split_cells specified)
show_cell_dend

whether to show dendrogram for cells
show_feature_dend

whether to show dendrogram for features
...

params passed to `ggexp::plot_heatmap`

Value

Examples

NULL
#> NULL