Scatterplot of two features of interest from colData with annotated thresholds and counts based on filters

Scatterplot of two features of interest from colData with annotated thresholds and counts based on filters

plot_gex_bivariate_qc(
  sce_list,
  x,
  y,
  color = NULL,
  shape = NULL,
  x_filters = NULL,
  y_filters = NULL,
  x_log = TRUE,
  y_log = TRUE,
  alpha = 1,
  text_size = 3,
  point_size = 0.05,
  facet_rows = NULL,
  facet_columns = NULL,
  facet_type = "grid",
  ...
)

Arguments

sce_list	list of SingleCellExperiment object
x	numeric column from colData that is in all objects in sce_list
y	numeric column from colData that is in all objects in sce_list
color	column from colData that is in all objects in sce_list
shape	column from colData that is in all objects in sce_list
x_filters	list of filters for each SCE object in sce_list from scater::isOutlier, or a vector with attribute named thresholds that is a vector with min and max allowed values
y_filters	list of filters for each SCE object in sce_list from scater::isOutlier, or a vector with attribute named thresholds that is a vector with min and max allowed values
x_log	whether to use log x-axis
y_log	whether to use log y-axis
text_size	font size for annotations
facet_rows	columns to facet on
facet_columns	columns to facet on
facet_type	either "wrap" or "grid", same as ggplot
...	other params passed into either facet_wrap or facet_grid, depending on facet_type parameter

Value

Examples

NULL
#> NULL