Read 10X gene expression and VDJ data into a SingleCellExperiment object

Source: R/io_10x.R

VDJ data is stored in colData(sce)$vdj for now. This makes it easy to manipulate using the tidyverse for assignment of clonotypes, etc.

read_10x(
  gene_expr_path = getwd(),
  vdj_path = NA,
  top_n_barcodes = NULL,
  nonzero_barcodes = FALSE
)

Arguments

gene_expr_path

path to gene expression data - this path must contain mtx, features, and barcodes file
vdj_path

path to vdj data - this path must contain all_contig_annotations.csv

Value

Examples

NULL
#> NULL